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2. The discovery of the depletion force.
- Author
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Kurihara, Kazue and Vincent, Brian
- Subjects
BASIC education ,AUTOBIOGRAPHY - Abstract
This Editorial reports how the depletion force theory was originally developed by Sho Asakura and Fumio Oosawa and how their one-page paper was "rediscovered" about 20 years after the paper was published. The first part of this Editorial is mostly based on the lecture by Oosawa and his autobiographies, and the second part is written by one of two scientists who found the paper. The aim of this Editorial is to record the background of the discovery of the depletion force. We believe that this Editorial presents an interesting story showing how science develops. The story reminds us of the importance of basic education and continuous interests in unknown phenomena and interactions between people of different disciplines, although they are sometimes considered as separate elements of research. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
3. 2021 JCP Emerging Investigator Special Collection.
- Author
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Ceriotti, Michele, Jensen, Lasse, Manolopoulos, David E., Martinez, Todd, Reichman, David R., Sciortino, Francesco, Sherrill, C. David, Shi, Qiang, Vega, Carlos, Wang, Lai-Sheng, Weiss, Emily A., Zhu, Xiaoyang, Stein, Jenny, and Lian, Tianquan
- Subjects
ELECTRON configuration ,EUTECTICS ,STATISTICAL physics ,PHYSICAL & theoretical chemistry ,COMPUTATIONAL physics ,SPACE charge ,NONEQUILIBRIUM statistical mechanics ,MOLECULAR vibration - Published
- 2023
- Full Text
- View/download PDF
4. Implementation of the locally renormalized CCSD(T) approaches for arbitrary reference function.
- Author
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Kowalski, Karol
- Subjects
- *
CHEMICAL reagents , *INDICATORS & test-papers , *ABDERHALDEN reaction , *ACTIVE metals , *ALKYLATING agents , *BIOLOGICAL reagents - Abstract
Several new variants of the locally-renormalized coupled-cluster (CC) approaches that account for the effect of triples (LR-CCSD(T)) have been formulated and implemented for arbitrary reference states using the TENSOR CONTRACTION ENGINE functionality, enabling the automatic generation of an efficient parallel code. Deeply rooted in the recently derived numerator–denominator-connected (NDC) expansion for the ground-state energy [K. Kowalski and P. Piecuch, J. Chem. Phys. 122, 074107 (2005)], LR-CCSD(T) approximations use, in analogy to the completely renormalized CCSD(T) (CR-CCSD(T)) approach, the three-body moments in constructing the noniterative corrections to the energies obtained in CC calculations with singles and doubles (CCSD). In contrast to the CR-CCSD(T) method, the LR-CCSD(T) approaches discussed in this paper employ local denominators, which assure the additive separability of the energies in the noninteracting system limit when the localized occupied spin-orbitals are employed in the CCSD and LR-CCSD(T) calculations. As clearly demonstrated on several challenging examples, including breaking the bonds of the F2, N2, and CN molecules, the LR-CCSD(T) approaches are capable of providing a highly accurate description of the entire potential-energy surface (PES), while maintaining the characteristic N7scaling of the ubiquitous CCSD(T) approach. Moreover, as illustrated numerically for the ozone molecule, the LR-CCSD(T) approaches yield highly competitive values for a number of equilibrium properties including bond lengths, angles, and harmonic frequencies. [ABSTRACT FROM AUTHOR]
- Published
- 2005
- Full Text
- View/download PDF
5. Comments on a paper by Straub, Borkovec, and Berne.
- Author
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Zwanzig, Robert
- Subjects
- *
COMPUTER simulation , *MARKOV processes , *PERTURBATION theory - Abstract
The paper referred to in the title, in J. Chem. Phys. 84, 1788 (1986), presented results of computer simulations of non-Markovian barrier crossing dynamics, and compared these results with various theoretical predictions. One comment made here is that the observed limited applicability of the Grote–Hynes theory can be explained by singular perturbation theory. The other comment concerns the importance of a second constant of the motion when the non-Markovian friction has a very long relaxation time. [ABSTRACT FROM AUTHOR]
- Published
- 1987
- Full Text
- View/download PDF
6. Reactivity indicators for degenerate states in the density-functional theoretic chemical reactivity theory.
- Author
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Cárdenas, Carlos, Ayers, Paul W., and Cedillo, Andrés
- Subjects
- *
REACTIVITY (Chemistry) , *INDICATORS & test-papers , *DENSITY functionals , *QUANTUM perturbations , *MOLECULAR orbitals , *POTENTIAL energy surfaces , *THEORY of distributions (Functional analysis) - Abstract
Density-functional-theory-based chemical reactivity indicators are formulated for degenerate and near-degenerate ground states. For degenerate states, the functional derivatives of the energy with respect to the external potential do not exist, and must be replaced by the weaker concept of functional variation. The resultant reactivity indicators depend on the specific perturbation. Because it is sometimes impractical to compute reactivity indicators for a specific perturbation, we consider two special cases: point-charge perturbations and Dirac delta function perturbations. The Dirac delta function perturbations provide upper bounds on the chemical reactivity. Reactivity indicators using the common used 'average of degenerate states approximation' for degenerate states provide a lower bound on the chemical reactivity. Unfortunately, this lower bound is often extremely weak. Approximate formulas for the reactivity indicators within the frontier-molecular-orbital approximation and special cases (two or three degenerate spatial orbitals) are presented in the supplementary material. One remarkable feature that arises in the frontier molecular orbital approximation, and presumably also in the exact theory, is that removing electrons sometimes causes the electron density to increase at the location of a negative (attractive) Dirac delta function perturbation. That is, the energetic response to a reduction in the external potential can increase even when the number of electrons decreases. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
7. Phase separation and aggregation in multiblock chains.
- Author
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Panagiotopoulos, Athanassios Z.
- Subjects
PHASE separation ,MONTE Carlo method ,PHASE transitions ,GAS condensate reservoirs ,BLOCKCHAINS - Abstract
This paper focuses on phase and aggregation behavior for linear chains composed of blocks of hydrophilic and hydrophobic segments. Phase and conformational transitions of patterned chains are relevant for understanding liquid–liquid separation of biomolecular condensates, which play a prominent role in cellular biophysics and for surfactant and polymer applications. Previous studies of simple models for multiblock chains have shown that, depending on the sequence pattern and chain length, such systems can fall into one of two categories: displaying either phase separation or aggregation into finite-size clusters. The key new result of this paper is that both formation of finite-size aggregates and phase separation can be observed for certain chain architectures at appropriate conditions of temperature and concentration. For such systems, a bulk dense liquid condenses from a dilute phase that already contains multi-chain finite-size aggregates. The computational approach used in this study involves several distinct steps using histogram-reweighting grand canonical Monte Carlo simulations, which are described in some level of detail. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
8. Boundary Free Energy in the Lattice Model. III. Solution of the Paradox.
- Author
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Kikuchi, Ryoichi
- Published
- 1972
- Full Text
- View/download PDF
9. Frontiers of stochastic electronic structure calculations.
- Author
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Morales-Silva, Miguel A., Jordan, Kenneth D., Shulenburger, Luke, and Wagner, Lucas K.
- Subjects
ELECTRONIC structure ,ELECTRON configuration ,CENTRAL processing units ,WAVE functions - Abstract
In recent years there has been a rapid growth in the development and application of new stochastic methods in electronic structure. These methods are quite diverse, from many-body wave function techniques in real space or determinant space to being used to sum perturbative expansions. This growth has been spurred by the more favorable scaling with the number of electrons and often better parallelization over large numbers of central processing unit (CPU) cores or graphical processing units (GPUs) than for high-end non-stochastic wave function based methods. This special issue of the Journal of Chemical Physics includes 33 papers that describe recent developments and applications in this area. As seen from the articles in the issue, stochastic electronic structure methods are applicable to both molecules and solids and can accurately describe systems with strong electron correlation. This issue was motivated, in part, by the 2019 Telluride Science Research Center workshop on Stochastic Electronic Structure Methods that we organized. Below we briefly describe each of the papers in the special issue, dividing the papers into six subtopics. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
10. Chemical physics software.
- Author
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Sherrill, C. David, Manolopoulos, David E., Martínez, Todd J., Ceriotti, Michele, and Michaelides, Angelos
- Subjects
PHYSICS ,COMPUTER software ,COMPUTER software quality control ,COMPUTATIONAL physics - Published
- 2021
- Full Text
- View/download PDF
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