1. 西伯利亚杏全基因组CBF 基因家族鉴定及低温胁迫下的表达模式.
- Author
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赵 硕, 陈建华, 李 彪, 张 剑, 董胜君, and 刘权钢
- Subjects
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APRICOT , *GENE expression , *TERTIARY structure , *LOW temperatures , *ISOELECTRIC point - Abstract
[Objective] The present paper aimed to identify CBF family members using whole genome data of Prunus sibirica, and to analyze the characteristics and functions of the conserved domains and their expression patterns after low temperature stress of CBF transcription fac- tors. [Method] By the P. sibirica whole genome database, the CBF genes of P. sibirica were searched using BLASTP and HMM, and their conserved structural domains were verified by CDD and MEME. Bioinformatics tools such as Prot-Param, WOLF PSORT, MAGA X, Phyre2 and PlantCARE were used to analyze protein physicochemical properties, subcellular localization, phylogeny, tertiary structure, chromosom- al localization and cis-elements, respectively. Quantitative real-time PCR (RT-qPCR) was used to analyze the expression pattern of CBF gene after low temperature stress in P. sibirica. [Result] In the study, four PSCBF's were identified, all of which possessed the conserved structural domains PKKPAGR and DSAWR sequences of the AP2 gene family. The PSCBFs contained 206-246 amino acids, with a mean molecular weight of 25. 80 KDa and a mean isoelectric point of 5.92. PSCBF3 and PSCBF4 were similar in gene structure and had closer ge- netic relationship. The subcellular localization of 4 PSCBFs was located in the nucleus. Promoter cis-acting element analysis showed that CBF family members could participate in plant hormone and abiotic stress responses. Four CBF members were all acidic and hydrophilic pro- teins. The expression of PSCBF's was higher mainly in the early stage (15 min) after low temperature stress. [Conclusion] The study shows more complete information on the CBF gene family of P. sibirica, which offers new insights into the complex mechanisms and pathways of PSCBF in response to low-temperature stress at different stages. It lays an important theoretical foundation for further investigations into the biological functions of CBF family members. [ABSTRACT FROM AUTHOR]
- Published
- 2023
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