1. 低拷贝病毒 RNA 捕获及多重实时荧光定量 PCR 检测.
- Author
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余 佳, 李晓宁, 肖君华, 李 凯, and 周宇荀
- Subjects
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NUCLEOTIDE sequence , *RNA viruses , *DETECTION limit , *STREPTAVIDIN , *BINDING sites - Abstract
Objective: To improve the detection sensitivity of COVID-19 and reduce the clinical false negative results, this paper constructed a SARS-CoV-2 RNA capture method which can extract low copy RNA. Methods: The biotin probe in this study was designed based on the conserved region of the SARS-CoV-2 genome sequence. Streptavidin magnetic beads-biotin probe capture method was used to capture SARS-CoV-2 pseudovirus RNA by optimizing capture conditions such as magnetic beads concentration, biotin probes concentration and the number of RNA elution times. SARS-CoV-2 pseudovirus was detected by reverse transcription real-time fluorescence quantitative PCR with reference to the SARS-Co V-2 ORF1ab and N gene primers and TaqMan probes published by WHO. This study used one step and step-by-step real-time fluorescence quantitative PCR detection, single and multiple real-time fluorescence quantitative PCR, and the detection results were compared respectively. Results: The biotin probe can capture the RNA sequence at least1.8K away from the probe binding site in this study. When the biotin probe concentration was 12.5 μM and the concentration of magnetic beads was 333.33 μg/m L, combined with the twice eluent of RNA, the capture efficiency was the highest for low copy SARS-CoV-2pseudovirus RNA. The study results showed that the step-by-step method was more sensitive than one-step method and two TaqMan probes were more sensitive than one TaqMan probe for real-time fluorescence quantitative PCR, and the minimum detection limit of the step-by-step and multiple real-time fluorescence quantitative PCR was 10 copies/μL. The intra-group and repeated experimental groups coefficient of variation was less than 1%. All negative control samples were negative in the study. Conclusions: The streptavidin magnetic beads-biotin probe capture method optimized in this study was an effective method to capture SARS-CoV-2 low copy pseudovirus RNA, the results of RNA extraction were better than some commercial kits, step-by-step and multiple real-time fluorescence quantitative PCR have achieved efficient detection of SARS-CoV-2 low copy pseudovirus RNA, which provides a reference solution for clinical detection of low copy RNA virus. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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